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1

Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS)

Hura, Greg L, Menon, Angeli L, Hammel, Michal, Rambo, Robert P, Poole II, Farris L, Tsutakawa, Susan E, Jenney Jr, Francis E, Classen, Scott, Frankel, Kenneth A, Hopkins, Robert C

Journal:

Year:

2009

Language:

english

File:

PDF, 866 KB

english, 2009

2

Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew

Horn, Hans W., Swope, William C., Pitera, Jed W., Madura, Jeffry D., Dick, Thomas J., Hura, Greg L., Head-Gordon, Teresa

Journal:

The Journal of Chemical Physics

Year:

2004

Language:

english

File:

PDF, 1.17 MB

english, 2004

3

Crystal structure of the unliganded retinoblastoma protein pocket domain

Eva Rose M. Balog, Jason R. Burke, Greg L. Hura, Seth M. Rubin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.21 MB

english, 2011

4

Exploring the repeat protein universe through computational protein design

Brunette, TJ, Parmeggiani, Fabio, Huang, Po-Ssu, Bhabha, Gira, Ekiert, Damian C., Tsutakawa, Susan E., Hura, Greg L., Tainer, John A., Baker, David

Journal:

Year:

2015

Language:

english

File:

PDF, 11.96 MB

english, 2015

5

Coiled coils unspring protein origami

Hura, Greg L, Tainer, John A

Journal:

Nature Biotechnology

Year:

2017

Language:

english

File:

PDF, 744 KB

english, 2017

6

Three-dimensional structure of the KChIP1–Kv4.3 T1 complex reveals a cross-shaped octamer

Pioletti, Marta, Findeisen, Felix, Hura, Greg L, Minor,, Daniel L

Journal:

Nature Structural and Molecular Biology

Year:

2006

Language:

english

File:

PDF, 689 KB

english, 2006

7

Solution X-ray scattering as a probe of hydration-dependent structuring of aqueous solutions

Greg Hura, Jon M. Sorenson, Robert M. Glaeser, Teresa Head-Gordon

Journal:

Perspectives in Drug Discovery and Design

Year:

1999

Language:

english

File:

PDF, 199 KB

english, 1999

8

X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution

Putnam, Christopher D., Hammel, Michal, Hura, Greg L., Tainer, John A.

Journal:

Quarterly Reviews of Biophysics

Year:

2007

Language:

english

File:

PDF, 2.55 MB

english, 2007

9

Structure of the Noncatalytic Domains and Global Fold of the Protein Disulfide Isomerase ERp72

Guennadi Kozlov, Pekka Määttänen, Joseph D. Schrag, Greg L. Hura, Lisa Gabrielli, Miroslaw Cygler, David Y. Thomas, Kalle Gehring

Journal:

Year:

2009

Language:

english

File:

PDF, 1.50 MB

english, 2009

10

Structural Basis of Guanine Nucleotide Exchange Mediated by the T-Cell Essential Vav1

Jill E. Chrencik, Alexei Brooun, Hui Zhang, Irimpan I. Mathews, Greg L. Hura, Scott A. Foster, J. Jefferson P. Perry, Markus Streiff, Paul Ramage, Hans Widmer, Gary M. Bokoch, John A. Tainer, Gisbert

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 2.82 MB

english, 2008

11

Superoxide Dismutase from the Eukaryotic Thermophile Alvinella pompejana: Structures, Stability, Mechanism, and Insights into Amyotrophic Lateral Sclerosis

David S. Shin, Michael DiDonato, David P. Barondeau, Greg L. Hura, Chiharu Hitomi, J. Andrew Berglund, Elizabeth D. Getzoff, S. Craig Cary, John A. Tainer

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 4.12 MB

english, 2009

12

The Structure and Conformation of Lys63-Linked Tetraubiquitin

Ajit B. Datta, Greg L. Hura, Cynthia Wolberger

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 465 KB

english, 2009

13

Structural analysis of flexible proteins in solution by small angle X-ray scattering combined with crystallography

Susan E. Tsutakawa, Greg L. Hura, Ken A. Frankel, Priscilla K. Cooper, John A. Tainer

Journal:

Journal of Structural Biology

Year:

2007

Language:

english

File:

PDF, 1.11 MB

english, 2007

14

Crosstalk between Primase Subunits Can Act to Regulate Primer Synthesis in trans

Jacob E. Corn, Paul J. Pease, Greg L. Hura, James M. Berger

Journal:

Year:

2005

Language:

english

File:

PDF, 603 KB

english, 2005

15

A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA

John M. Pascal, Oleg V. Tsodikov, Greg L. Hura, Wei Song, Elizabeth A. Cotner, Scott Classen, Alan E. Tomkinson, John A. Tainer, Tom Ellenberger

Journal:

Year:

2006

Language:

english

File:

PDF, 1.11 MB

english, 2006

16

A high-quality x-ray scattering experiment on liquid water at ambient conditions

Hura, Greg, Sorenson, Jon M., Glaeser, Robert M., Head-Gordon, Teresa

Journal:

The Journal of Chemical Physics

Year:

2000

Language:

english

File:

PDF, 982 KB

english, 2000

17

What can x-ray scattering tell us about the radial distribution functions of water?

Sorenson, Jon M., Hura, Greg, Glaeser, Robert M., Head-Gordon, Teresa

Journal:

The Journal of Chemical Physics

Year:

2000

Language:

english

File:

PDF, 393 KB

english, 2000

18

Implementation and performance of SIBYLS: a dual endstation small-angle X-ray scattering and macromolecular crystallography beamline at the Advanced Light Source

Classen, Scott, Hura, Greg L., Holton, James M., Rambo, Robert P., Rodic, Ivan, McGuire, Patrick J., Dyer, Kevin, Hammel, Michal, Meigs, George, Frankel, Kenneth A., Tainer, John A.

Journal:

Journal of Applied Crystallography

Year:

2013

Language:

english

File:

PDF, 936 KB

english, 2013

19

Hydration Dynamics Near a Model Protein Surface

Russo, Daniela, Hura, Greg, Head-Gordon, Teresa

Journal:

Biophysical Journal

Year:

2004

Language:

english

File:

PDF, 212 KB

english, 2004

20

Proteomic Scale Small Angle X-ray Scattering (SAXS):applications and Implications

Hura, Greg L., Hammel, Michal, Tainer, John A., Adams, Mike W., Menon, Angeli L., Classen, Scott, Rambo, Robert

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 38 KB

english, 2010

21

Water Structure from Scattering Experiments and Simulation

Head-Gordon, Teresa, Hura, Greg

Journal:

Chemical Reviews

Year:

2002

Language:

english

File:

PDF, 326 KB

english, 2002

22

Water structure as a function of temperature from X-ray scattering experiments and ab initio molecular dynamics

Hura, Greg, Russo, Daniela, Glaeser, Robert M., Head-Gordon, Teresa, Krack, Matthias, Parrinello, Michele

Journal:

Physical Chemistry Chemical Physics

Year:

2003

Language:

english

File:

PDF, 910 KB

english, 2003

23

Determining the Role of Hydration Forces in Protein Folding

Sorenson, Jon M., Hura, Greg, Soper, Alan K., Pertsemlidis, Alexander, Head-Gordon, Teresa

Journal:

Journal of Physical Chemistry B

Year:

1999

Language:

english

File:

PDF, 328 KB

english, 1999

24

Structure, Dynamics, and Specificity of Endoglucanase D from Clostridium cellulovorans

Bianchetti, Christopher M., Brumm, Phillip, Smith, Robert W., Dyer, Kevin, Hura, Greg L., Rutkoski, Thomas J., Phillips, George N.

Journal:

Journal of Molecular Biology

Year:

2013

Language:

english

File:

PDF, 2.95 MB

english, 2013

25

Corrigendum to “The Structure and Conformation of Lys63-Linked Tetraubiquitin” [J. Mol. Biol. 392 (2009) 1117–1124]

Datta, Ajit B., Hura, Greg L., Wolberger, Cynthia

Journal:

Journal of Molecular Biology

Year:

2014

Language:

english

File:

PDF, 138 KB

english, 2014

26

Intact Functional Fourteen-subunit Respiratory Membrane-bound [NiFe]-Hydrogenase Complex of the Hyperthermophilic Archaeon Pyrococcus furiosus

McTernan, Patrick M., Chandrayan, Sanjeev K., Wu, Chang-Hao, Vaccaro, Brian J., Lancaster, W. Andrew, Yang, Qingyuan, Fu, Dax, Hura, Greg L., Tainer, John A., Adams, Michael W. W.

Journal:

Journal of Biological Chemistry

Year:

2014

Language:

english

File:

PDF, 1.37 MB

english, 2014

27

Structural and Functional Characterization of CalS11, a TDP-Rhamnose 3′- O -Methyltransferase Involved in Calicheamicin Biosynthesis

Singh, Shanteri, Chang, Aram, Helmich, Kate E., Bingman, Craig A., Wrobel, Russell L., Beebe, Emily T., Makino, Shin-ichi, Aceti, David J., Dyer, Kevin, Hura, Greg L., Sunkara, Manjula, Morris, Andrew

Journal:

ACS Chemical Biology

Year:

2013

Language:

english

File:

PDF, 977 KB

english, 2013

28

Evidence for Anomalous Hydration Dynamics near a Model Hydrophobic Peptide †

Russo, Daniela, Murarka, Rajesh K., Hura, Greg, Verschell, Elizabeth, Copley, John R. D., Head-Gordon, Teresa

Journal:

Journal of Physical Chemistry B

Year:

2004

Language:

english

File:

PDF, 159 KB

english, 2004

29

Structure of a designed protein cage that self-assembles into a highly porous cube

Lai, Yen-Ting, Reading, Eamonn, Hura, Greg L., Tsai, Kuang-Lei, Laganowsky, Arthur, Asturias, Francisco J., Tainer, John A., Robinson, Carol V., Yeates, Todd O.

Journal:

Nature Chemistry

Year:

2014

Language:

english

File:

PDF, 4.76 MB

english, 2014

30

Effects of hydration water on protein methyl group dynamics in solution

Russo, Daniela, Hura, Greg L., Copley, John R. D.

Journal:

Physical Review E

Year:

2007

Language:

english

File:

PDF, 201 KB

english, 2007

31

Crystal Structure of the Bifunctional Proline Utilization A Flavoenzyme from Bradyrhizobium japonicum

Dhiraj Srivastava, Jonathan P. Schuermann, Tommi A. White, Navasona Krishnan, Nikhilesh Sanyal, Greg L. Hura, Anmin Tan, Michael T. Henzl, Donald F. Becker, John J. Tanner and JoAnne Stubbe

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.57 MB

english, 2010

32

Comprehensive macromolecular conformations mapped by quantitative SAXS analyses

Hura, Greg L, Budworth, Helen, Dyer, Kevin N, Rambo, Robert P, Hammel, Michal, McMurray, Cynthia T, Tainer, John A

Journal:

Year:

2013

Language:

english

File:

PDF, 540 KB

english, 2013

33

Small-angle scattering and the structure of ambient liquid water

Gary N. I. Clark, Greg L. Hura, Jose Teixeira, Alan K. Soper, Teresa Head-Gordon and John D. Weeks

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.15 MB

english, 2010

34

RNF8 E3 Ubiquitin Ligase Stimulates Ubc13 E2 Conjugating Activity that is Essential for DNA Double-Strand Break Signaling and BRCA1 Tumor Suppressor Recruitment

Hodge, Curtis D., Ismail, Ismail H., Edwards, Ross A., Hura, Greg L., Xiao, Andrew T., Tainer, John A., Hendzel, Michael J., Glover, J. N. Mark

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 4.84 MB

english, 2016

35

Lipid Cross-Linking of Nanolipoprotein Particles Substantially Enhances Serum Stability and Cellular Uptake

Gilmore, Sean F., Blanchette, Craig D., Scharadin, Tiffany M., Hura, Greg L., Rasley, Amy, Corzett, Michele, Pan, Chong-xian, Fischer, Nicholas O., Henderson, Paul T.

Journal:

ACS Applied Materials & Interfaces

Year:

2016

Language:

english

File:

PDF, 1.25 MB

english, 2016

36

Structural transition of nanogel star polymers with pH by controlling PEGMA interactions with acid or base copolymers

Felberg, Lisa E., Doshi, Anjali, Hura, Greg L., Sly, Joseph, Piunova, Victoria A., Swope, William C., Rice, Julia E., Miller, Robert, Head-Gordon, Teresa

Journal:

Molecular Physics

Year:

2016

Language:

english

File:

PDF, 1.36 MB

english, 2016

37

Defining NADH-Driven Allostery Regulating Apoptosis-Inducing Factor

Brosey, Chris A., Ho, Chris, Long, Winnie Z., Singh, Sukrit, Burnett, Kathryn, Hura, Greg L., Nix, Jay C., Bowman, Gregory R., Ellenberger, Tom, Tainer, John A.

Journal:

Year:

2016

Language:

english

File:

PDF, 4.90 MB

english, 2016

38

Formation of a repressive complex in the mammalian circadian clock is mediated by the secondary pocket of CRY1

Michael, Alicia K., Fribourgh, Jennifer L., Chelliah, Yogarany, Sandate, Colby R., Hura, Greg L., Schneidman-Duhovny, Dina, Tripathi, Sarvind M., Takahashi, Joseph S., Partch, Carrie L.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.70 MB

english, 2017

39

Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy

Ogorzalek, Tadeusz L., Hura, Greg L., Belsom, Adam, Burnett, Kathryn H., Kryshtafovych, Andriy, Tainer, John A., Rappsilber, Juri, Tsutakawa, Susan E., Fidelis, Krzysztof

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2018

Language:

english

File:

PDF, 1.79 MB

english, 2018

40

A Calmodulin C-Lobe Ca 2+ -Dependent Switch Governs Kv7 Channel Function

Chang, Aram, Abderemane-Ali, Fayal, Hura, Greg L., Rossen, Nathan D., Gate, Rachel E., Minor, Daniel L.

Journal:

Year:

2018

Language:

english

File:

PDF, 6.22 MB

english, 2018

41

Small Angle X-ray Scattering for Data-Assisted Structure Prediction in CASP12 with Prospects to Improve Accuracy

Ogorzalek, Tadeusz L., Hura, Greg L., Kryshtafovych, Andriy, Tainer, John A., Fidelis, Krzysztof, Tsutakawa, Susan E.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 61 KB

english, 2018

42

2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update

Trewhella, Jill, Duff, Anthony P., Durand, Dominique, Gabel, Frank, Guss, J. Mitchell, Hendrickson, Wayne A., Hura, Greg L., Jacques, David A., Kirby, Nigel M., Kwan, Ann H., Pérez, Javier, Pollack, L

Journal:

Acta Crystallographica Section D Structural Biology

Year:

2017

Language:

english

File:

PDF, 1.33 MB

english, 2017

43

Characterizing E. coli Phosphoenolpyruvate Carboxykinase Conformational States through Small Angle X-Ray Scattering

Hura, Greg L., Tang, Henry Y.H., Tainer, John A.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 40 KB

english, 2018

44

Small angle X‐ray scattering‐assisted protein structure prediction in CASP13 and emergence of solution structure differences

Hura, Greg L., Hodge, Curtis D., Rosenberg, Daniel, Guzenko, Dmytro, Duarte, Jose M., Monastyrskyy, Bohdan, Grudinin, Sergei, Kryshtafovych, Andriy, Tainer, John A., Fidelis, Krzysztof, Tsutakawa, Sus

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2019

Language:

english

File:

PDF, 4.54 MB

english, 2019

45

Small angle X‐ray scattering‐assisted protein structure prediction in CASP13 and emergence of solution structure differences

Hura, Greg L., Hodge, Curtis D., Rosenberg, Daniel, Guzenko, Dmytro, Duarte, Jose M., Monastyrskyy, Bohdan, Grudinin, Sergei, Kryshtafovych, Andriy, Tainer, John A., Fidelis, Krzysztof, Tsutakawa, Sus

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2019

File:

PDF, 4.54 MB

2019